Due to a high load of modelling projects, the rate of submission via the website has been reduced.
For a much higher submission rate, please use the Modelling API.

SMTL ID : 4x17.1

JC Mad-1 polyomavirus VP1 in complex with GD1b oligosaccharide

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.75 Å
Oligo State
homo-pentamer
Ligands
2 x SIA- SIA: N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid(Non-covalent)
17 x GOL: GLYCEROL(Non-functional Binders)
7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
2 x K: POTASSIUM ION(Non-covalent)
1 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Stroh, L.J. et al., The Greater Affinity of JC Polyomavirus Capsid for alpha 2,6-Linked Lactoseries Tetrasaccharide c than for Other Sialylated Glycans Is a Major Determinant of Infectivity. J.Virol. (2015)
Release Date
2015-04-22
Peptides
Major capsid protein VP1: ABCDE
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E

Major capsid protein VP1

Toggle Identical (AD) Toggle Identical (BE)

Related Entries With Identical Sequence

3nxd.1 | 3nxd.2 | 3nxg.1 | 3nxg.2 | 4x14.1 | 4x15.1 | 4x16.1 | 7pa6.1 | 7pa6.2 | 7pa8.1 | 7pa9.1 | 7pa9.2 | 7paa.1 | 7paa.2 | 7zil.1 | 7zim.1 | 7zin.1 | 7zio.1