SMTL ID : 4x1w.1 (1 other biounit)

Crystal structure of unbound RHDVb P domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 12 residues within 4Å: Chain A: T.134, T.135, V.136, Q.137, G.169, V.170, A.171 Chain B: T.134, V.136, Q.137, V.170, A.171 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:T.134, B:A.171, A:T.134, A:Q.137, A:A.171 EDO.2: 6 residues within 4Å: Chain A: H.60, D.61, S.85, A.86, A.87, D.88 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.61, A:A.86, A:D.88, A:D.88

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: N.89, P.96, D.97 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leuthold, M.M. et al., Structural analysis of a rabbit hemorrhagic disease virus binding to histo-blood group antigens. J.Virol. (2015)

Release Date

2015-01-14

Peptides

VP1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

VP1

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