SMTL ID : 4x22.1

Crystal structure of Leptospira Interrogans Triosephosphate Isomerase (LiTIM)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-dimer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: I.61, V.91, T.123 No protein-ligand interaction detected (PLIP) EDO.2: 3 residues within 4Å: Chain A: A.73, A.74 Chain B: N.13 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:A.74, B:N.13 Water bridges: B:N.13 EDO.3: 3 residues within 4Å: Chain A: S.146, R.149, E.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.150 EDO.4: 2 residues within 4Å: Chain A: S.182, E.228 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.182, A:E.228 Water bridges: A:S.182 EDO.6: 3 residues within 4Å: Chain B: I.61, V.91, T.123 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.123 EDO.7: 3 residues within 4Å: Chain A: N.13 Chain B: A.73, A.74 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.13, B:A.74 Water bridges: A:N.13 EDO.8: 3 residues within 4Å: Chain B: S.146, R.149, E.150 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.150, B:E.150 EDO.9: 2 residues within 4Å: Chain B: S.182, E.228 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.182, B:E.228 Water bridges: B:S.182

2 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.5: 6 residues within 4Å: Chain A: F.102, L.103 Chain B: L.103, G.104, F.109 Ligands: PG0.10 No protein-ligand interaction detected (PLIP) PG0.10: 6 residues within 4Å: Chain A: L.103, G.104, F.109 Chain B: F.102, L.103 Ligands: PG0.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pareek, V. et al., Connecting Active-Site Loop Conformations and Catalysis in Triosephosphate Isomerase: Insights from a Rare Variation at Residue 96 in the Plasmodial Enzyme. Chembiochem (2016)

Release Date

2016-02-10

Peptides

Triosephosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Triosephosphate isomerase