SMTL ID : 4x2b.1

K20A RNA dependent RNA polymerase mutant from Foot-and-Mouth disease Virus complexed with an RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.94 Å

Oligo State

monomer

Ligands

1 x A- U- G- G- G- C- C: RNA template(Non-covalent)

A-U-G-G-G-C-C.1: 33 residues within 4Å: Chain A: M.16, K.18, G.107, L.108, D.109, E.112, D.114, T.115, A.116, R.127, R.128, L.163, K.164, D.165, V.181, I.189, R.193, H.204, V.215, G.216, C.217, N.218, G.299, S.301, T.303, S.304, Y.336, S.426 Ligands: G-G-G-C-C-C.2, G-G-G-C-C-C.2, G-G-G-C-C-C.2, G-G-G-C-C-C.2, G-G-G-C-C-C.2 Protein-ligand interaction information (PLIP) not available

1 x G- G- G- C- C- C: RNA primer(Non-covalent)

G-G-G-C-C-C.2: 23 residues within 4Å: Chain A: D.114, K.164, S.304, Y.336, G.337, D.338, D.339, L.386, K.387, R.388, M.403, I.411, R.416, T.419, E.422, K.423, S.426, L.430 Ligands: A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1, A-U-G-G-G-C-C.1 Protein-ligand interaction information (PLIP) not available

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: D.238, V.239, D.240, D.339, T.384 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.238, A:D.240, A:D.339

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrer-Orta, C. et al., Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition. J.Virol. (2015)

Release Date

2015-05-06

Peptides

RNA dependent RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA dependent RNA polymerase