SMTL ID : 4x44.1

Crystal Structure of Mutant R89Q of human Adenine phosphoribosyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 16 residues within 4Å: Chain A: V.25, F.26, R.27, R.67, D.127, D.128, L.129, L.130, A.131, T.132, G.133, G.134, T.135, L.159 Ligands: SO4.2, GOL.3 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:V.25, A:R.27, A:R.67, A:R.67, A:D.127, A:D.128, A:A.131, A:T.132, A:T.132, A:T.132, A:G.133, A:G.134, A:T.135, A:T.135 Water bridges: A:K.88, A:M.136 AMP.4: 16 residues within 4Å: Chain B: V.25, F.26, R.27, R.67, D.127, D.128, L.129, L.130, A.131, T.132, G.133, G.134, T.135, L.159 Ligands: SO4.5, GOL.6 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:V.25, B:R.27, B:R.67, B:R.67, B:D.127, B:D.128, B:A.131, B:T.132, B:T.132, B:T.132, B:G.133, B:G.134, B:T.135, B:T.135 Water bridges: B:K.88, B:M.136

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.67 Chain B: R.87, K.91 Ligands: AMP.1 12 PLIP interactions: 8 interactions with chain A, 4 interactions with chain B Water bridges: A:S.66, A:R.67, A:R.67, A:R.67, A:K.88, A:K.88, B:R.87, B:K.91 Salt bridges: A:R.67, A:K.88, B:R.87, B:K.91 SO4.5: 4 residues within 4Å: Chain A: R.87, K.91 Chain B: R.67 Ligands: AMP.4 12 PLIP interactions: 4 interactions with chain A, 8 interactions with chain B Water bridges: A:R.87, A:K.91, B:S.66, B:R.67, B:R.67, B:R.67, B:K.88, B:K.88 Salt bridges: A:R.87, A:K.91, B:R.67, B:K.88

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: L.103, G.106, K.107, A.108, T.132, G.134, T.135 Ligands: AMP.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.107, A:T.132, A:G.134, A:T.135 GOL.6: 8 residues within 4Å: Chain B: L.103, G.106, K.107, A.108, T.132, G.134, T.135 Ligands: AMP.4 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.107, B:T.132, B:T.132, B:G.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pimenta, A. et al., Crystal Structure of Mutant R89Q of human Adenine phosphoribosyltransferase. To Be Published

Release Date

2015-12-02

Peptides

Adenine phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Adenine phosphoribosyltransferase