SMTL ID : 4x5z.1

menin in complex with MI-136

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: P.17, R.19 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.19 SO4.2: 4 residues within 4Å: Chain A: Y.118, F.119, R.122, K.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.119 Salt bridges: A:R.122 SO4.3: 2 residues within 4Å: Chain A: K.362, R.419 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.419 SO4.4: 6 residues within 4Å: Chain A: R.317, N.318, V.319, R.320, G.374, A.376 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.319, A:R.320, A:A.376

1 x 3XY: 5-[(4-{[6-(2,2,2-trifluoroethyl)thieno[2,3-d]pyrimidin-4-yl]amino}piperidin-1-yl)methyl]-1H-indole-2-carbonitrile(Non-covalent)

3XY.5: 17 residues within 4Å: Chain A: S.140, L.162, S.163, E.164, D.165, H.166, A.167, F.223, Y.261, M.263, Y.304, M.307, Y.308, G.311, W.326, E.348 Ligands: DMS.7 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.304, A:M.307 Hydrogen bonds: A:E.348 Water bridges: A:E.164

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.6: 4 residues within 4Å: Chain A: Y.346, K.347, F.350, H.406 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.346

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.7: 5 residues within 4Å: Chain A: S.140, F.223, C.226, A.227 Ligands: 3XY.5 No protein-ligand interaction detected (PLIP) DMS.9: 2 residues within 4Å: Chain A: G.371, Q.373 No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 3 residues within 4Å: Chain A: W.111, K.120, W.183 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borkin, D. et al., Pharmacologic Inhibition of the Menin-MLL Interaction Blocks Progression of MLL Leukemia In Vivo. Cancer Cell (2015)

Release Date

2015-04-15

Peptides

Menin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Menin

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