SMTL ID : 4x6y.1

Human soluble epoxide hydrolase in complex with a cyclopropyl urea derivative

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x S94: 4-phenoxy-N-[(1S,2R)-2-phenylcyclopropyl]piperidine-1-carboxamide(Non-covalent)

S94.1: 15 residues within 4Å: Chain A: F.48, D.116, W.117, M.120, Y.164, Q.165, F.168, L.189, M.200, L.209, Y.247, V.279, L.280, M.284, H.305 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.48, A:F.48, A:W.117, A:W.117, A:Y.164, A:F.168, A:L.189, A:L.209, A:L.280 Hydrogen bonds: A:D.116, A:Y.164 S94.2: 12 residues within 4Å: Chain B: F.48, D.116, W.117, M.120, Y.164, L.189, L.209, Y.247, V.279, L.280, M.284, H.305 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.48, B:F.48, B:W.117, B:Y.164, B:Y.164, B:L.189, B:L.209, B:V.279, B:L.280 Hydrogen bonds: B:D.116, B:Y.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takai, K. et al., Three-dimensional rational approach to the discovery of potent substituted cyclopropyl urea soluble epoxide hydrolase inhibitors. Bioorg.Med.Chem.Lett. (2015)

Release Date

2015-04-08

Peptides

Bifunctional epoxide hydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bifunctional epoxide hydrolase 2

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