SMTL ID : 4x8c.1

Crystal structure of human peptidylarginine deiminase type4 (PAD4) in complex with GSK147

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.361, F.415, G.416, L.418, E.419 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.361, A:F.415 CA.2: 3 residues within 4Å: Chain A: N.161, D.184, D.187 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.184 CA.4: 5 residues within 4Å: Chain B: E.361, F.415, G.416, L.418, E.419 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.361, B:F.415 CA.5: 3 residues within 4Å: Chain B: N.161, D.184, D.187 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.184

2 x 3YZ: [(3S,4R)-3-amino-4-hydroxypiperidin-1-yl]{2-[1-(cyclopropylmethyl)-1H-pyrrolo[2,3-b]pyridin-2-yl]-7-methoxy-1-methyl-1H-benzimidazol-5-yl}methanone(Non-covalent)

3YZ.3: 15 residues within 4Å: Chain A: G.416, V.477, H.479, D.481, E.482, F.523, E.588, A.589, F.590, F.591, P.592, N.593, N.596, F.642, V.651 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.477, A:F.523, A:F.642, A:F.642, A:V.651 Hydrogen bonds: A:D.481, A:N.593, A:N.596, A:V.651 3YZ.6: 15 residues within 4Å: Chain B: G.416, V.477, H.479, D.481, E.482, F.523, E.588, A.589, F.590, F.591, P.592, N.593, N.596, F.642, V.651 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:V.477, B:F.523, B:F.642, B:F.642, B:V.651 Hydrogen bonds: B:H.479, B:D.481, B:N.593, B:N.596, B:V.651

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lewis, H.D. et al., Inhibition of PAD4 activity is sufficient to disrupt mouse and human NET formation. Nat.Chem.Biol. (2015)

Release Date

2015-01-28

Peptides

Protein-arginine deiminase type-4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein-arginine deiminase type-4

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