SMTL ID : 4x9h.1

Crystal structure of Dscam1 isoform 8.4, N-terminal four Ig domains

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 7 residues within 4Å: Chain A: N.22, S.23, F.70, R.71, A.72, V.106, S.107 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.2: 7 residues within 4Å: Chain B: N.22, S.23, F.70, R.71, A.72, V.106, S.107 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 6 residues within 4Å: Chain A: R.256, V.299, V.300, N.301, G.306, E.307 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.256, A:N.301, A:G.306 NAG.4: 4 residues within 4Å: Chain B: V.299, N.301, G.306, E.307 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, S.A. et al., Structural basis of Dscam1 homodimerization: Insights into context constraint for protein recognition. Sci Adv (2016)

Release Date

2015-12-16

Peptides

Down syndrome cell adhesion molecule, isoform AP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Down syndrome cell adhesion molecule, isoform AP