SMTL ID : 4x9m.1

Oxidized L-alpha-Glycerophosphate Oxidase from Mycoplasma pneumoniae with FAD bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 38 residues within 4Å: Chain A: V.43, G.44, G.45, G.46, V.47, I.48, E.67, K.68, H.69, E.75, T.76, S.77, A.79, N.80, S.81, G.82, V.83, H.85, T.209, E.210, V.211, A.242, A.243, G.244, Y.246, L.250, Y.268, G.352, S.353, R.354, M.380, K.381, S.382, P.383, G.384, L.385, T.386 Ligands: G3P.3 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:T.76, A:N.80, A:Y.268, A:R.354 Hydrogen bonds: A:G.45, A:G.46, A:I.48, A:K.68, A:H.69, A:T.76, A:S.77, A:S.77, A:S.81, A:V.83, A:V.83, A:V.211, A:V.211, A:K.381, A:G.384, A:L.385, A:T.386 Water bridges: A:G.49, A:Q.74, A:E.75, A:G.244, A:S.382 pi-Cation interactions: A:K.68, A:R.354

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 1 residues within 4Å: Chain A: H.93 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.93, H2O.2

1 x G3P: SN-GLYCEROL-3-PHOSPHATE(Covalent)

G3P.3: 7 residues within 4Å: Chain A: S.81, H.85, K.292, G.293, R.354, S.382 Ligands: FAD.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.81, A:S.382, A:S.382 Water bridges: A:D.89, A:R.264, A:R.354, A:R.354 Salt bridges: A:R.354, A:K.381

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elkhal, C.K. et al., Structure and proposed mechanism of l-alpha-glycerophosphate oxidase from Mycoplasma pneumoniae. Febs J. (2015)

Release Date

2015-03-04

Peptides

L-alpha-glycerophosphate oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L-alpha-glycerophosphate oxidase

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