SMTL ID : 4xat.1

Crystal structure of the olfactomedin domain from noelin/pancortin/olfactomedin-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.139, M.141, E.187, A.188, L.235, D.236 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.139, A:E.187, A:A.188, A:L.235, H2O.3

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: I.16, S.17, P.224, F.225, Q.226 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.226 Water bridges: A:I.16, A:P.224, A:Q.226 GOL.3: 6 residues within 4Å: Chain A: M.63, D.241, A.243, Y.245, L.254, N.256 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.241, A:Y.245, A:Y.245, A:N.256, A:N.256

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 5 residues within 4Å: Chain A: G.85, Q.86, D.139, L.140, D.236 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.140, A:D.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hill, S.E. et al., Molecular Details of Olfactomedin Domains Provide Pathway to Structure-Function Studies. Plos One (2015)

Release Date

2015-07-15

Peptides

Noelin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Noelin