SMTL ID : 4xbo.1

Crystal structure of full length E.coli TrmJ in complex with SAH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: T.79, S.80, A.81, F.113, G.114, R.115, E.116, R.117, G.119, L.120, V.132, A.133, I.134, S.141, S.142, L.143, L.145, A.148 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.79, A:A.81, A:G.114, A:R.115, A:L.120, A:I.134, A:I.134, A:S.142, A:S.142, A:L.143 SAH.2: 16 residues within 4Å: Chain B: T.79, S.80, A.81, F.113, G.114, R.115, R.117, G.119, V.132, A.133, I.134, S.141, S.142, L.143, L.145, A.148 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:T.79, B:T.79, B:A.81, B:G.114, B:L.120, B:I.134, B:I.134, B:S.142, B:L.143 Water bridges: B:R.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, R.J. et al., tRNA recognition by a bacterial tRNA Xm32 modification enzyme from the SPOUT methyltransferase superfamily. Nucleic Acids Res. (2015)

Release Date

2015-12-23

Peptides

tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ