- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x T3F: (3R,4S,5R,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl][hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate(Non-covalent)
- 2 x FON: N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid(Non-covalent)
FON.2: 15 residues within 4Å:- Chain A: F.96, D.97, K.98, I.99, I.100, M.124, I.145, D.146, H.147, G.148, I.149, D.150, Y.207, K.210
- Ligands: T3F.3
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:I.99, A:I.99, A:I.149
- Hydrogen bonds: A:K.98, A:I.100, A:I.100, A:G.148, A:D.150, A:Y.207, A:K.210
- Water bridges: A:N.112, A:N.112
- Salt bridges: A:K.211
FON.10: 15 residues within 4Å:- Chain B: F.96, D.97, K.98, I.99, I.100, M.124, I.145, D.146, H.147, G.148, I.149, D.150, Y.207, K.210
- Ligands: T3F.11
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:I.99, B:I.99, B:I.149
- Hydrogen bonds: B:K.98, B:I.100, B:I.100, B:G.148, B:D.150, B:K.210
- Water bridges: B:N.112, B:N.112, B:H.114, B:D.150
- Salt bridges: B:K.211
- 2 x K: POTASSIUM ION(Non-covalent)
K.4: 4 residues within 4Å:- Chain A: S.261, S.263, S.279, T.280
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:S.261, A:S.279, A:T.280, H2O.5, H2O.12
K.12: 4 residues within 4Å:- Chain B: S.261, S.263, S.279, T.280
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:S.261, B:S.279, B:T.280, H2O.18, H2O.25
- 6 x NA: SODIUM ION(Non-functional Binders)
NA.5: 3 residues within 4Å:- Chain A: N.404, K.405, N.406
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.406
NA.6: 3 residues within 4Å:- Chain A: Y.125, K.210, I.213
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.213
- Water bridges: A:K.216
NA.7: 2 residues within 4Å:- Chain A: I.155, S.196
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.155, A:S.196
NA.13: 3 residues within 4Å:- Chain B: N.404, K.405, N.406
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.405
NA.14: 3 residues within 4Å:- Chain B: Y.125, K.210, I.213
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.125, B:Y.125
- Water bridges: B:K.216
NA.15: 2 residues within 4Å:- Chain B: I.155, S.196
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.196, B:S.196
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Woodford, C.R. et al., New Role for the Ankyrin Repeat Revealed by a Study of the N-Formyltransferase from Providencia alcalifaciens. Biochemistry (2015)
- Release Date
- 2015-01-21
- Peptides
- TDP-3-aminoquinovose-N-formyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x T3F: (3R,4S,5R,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl][hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate(Non-covalent)
- 2 x FON: N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid(Non-covalent)
- 2 x K: POTASSIUM ION(Non-covalent)
- 6 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Woodford, C.R. et al., New Role for the Ankyrin Repeat Revealed by a Study of the N-Formyltransferase from Providencia alcalifaciens. Biochemistry (2015)
- Release Date
- 2015-01-21
- Peptides
- TDP-3-aminoquinovose-N-formyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A