SMTL ID : 4xeb.1

The structure of P. funicolosum Cel7A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.1: 12 residues within 4Å: Chain A: Q.172, H.225, T.243, R.248, P.255, D.256, D.259, R.264, V.376, W.380, Y.385, R.397 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.172, A:H.225, A:H.225, A:R.248, A:R.248 Water bridges: A:T.223

1 x BGC- BGC- BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Post Translational Modification)

BGC-BGC-BGC-BGC-BGC-BGC.2: 23 residues within 4Å: Chain A: N.37, W.38, R.39, W.40, N.49, Y.51, Y.82, N.100, V.101, R.104, Y.142, Y.168, D.170, D.176, K.178, N.195, N.197, T.198, Y.244, S.369, W.371, D.372 Ligands: K.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.49, A:N.49

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: S.21, P.428, F.429, N.430 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.428 Hydrogen bonds: A:N.430 Water bridges: A:R.304, A:R.304 NAG.4: 1 residues within 4Å: Chain A: N.388 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.388 NAG.5: 3 residues within 4Å: Chain A: Y.6, N.45, T.46 4 PLIP interactions: 4 interactions with chain A Water bridges: A:Y.6, A:S.47, A:S.47, A:S.47

3 x K: POTASSIUM ION(Non-covalent)

K.6: 4 residues within 4Å: Chain A: D.170, Q.172, E.209 Ligands: BGC-BGC-BGC-BGC-BGC-BGC.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.170, A:E.209, A:E.209, H2O.16, H2O.19 K.7: 1 residues within 4Å: Chain A: T.86 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.86, A:T.86, H2O.15, H2O.19, H2O.23 K.8: 2 residues within 4Å: Chain A: T.399, C.400 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.399, H2O.12, H2O.14

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 2 residues within 4Å: Chain A: Y.249, T.344 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.344, A:T.344

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 7 residues within 4Å: Chain A: D.259, F.260, N.261, R.264, L.265, Y.333, E.337 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, L.E. et al., Engineering enhanced cellobiohydrolase activity. Nat Commun (2018)

Release Date

2016-06-22

Peptides

Glucanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucanase