SMTL ID : 4xed.1

PKD domain of M14-like peptidase from Thermoplasmatales archaeon SCGC AB-540-F20

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: N.4, D.5, D.32, N.34, D.36, D.82 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.5, A:D.32, A:D.32, A:D.36, A:D.82

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: Y.41, K.79, W.90 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.79 Water bridges: A:Y.41, A:E.43, A:W.52 EDO.3: 2 residues within 4Å: Chain A: G.45, G.47 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michalska, K. et al., PKD domain of M14-like peptidase from Thermoplasmatales archaeon SCGC AB-540-F20. To Be Published

Release Date

2015-05-13

Peptides

Peptidase M14, carboxypeptidase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidase M14, carboxypeptidase A