SMTL ID : 4xfx.1

Structure of the native full-length HIV-1 capsid protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

homo-hexamer

Ligands

42 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: R.173 Chain F: G.61 Ligand excluded by PLIP IOD.2: 4 residues within 4Å: Chain A: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: P.38 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: N.21 Chain E: R.18 Ligand excluded by PLIP IOD.5: 4 residues within 4Å: Chain A: R.162, M.215, Q.219 Chain F: M.144 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: L.172, R.173 Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain A: S.16, P.17 Chain E: R.18 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain B: R.173 Chain D: G.61 Ligand excluded by PLIP IOD.11: 4 residues within 4Å: Chain B: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.12: 1 residues within 4Å: Chain B: P.38 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain B: N.21 Chain F: R.18 Ligand excluded by PLIP IOD.14: 4 residues within 4Å: Chain B: R.162, M.215, Q.219 Chain D: M.144 Ligand excluded by PLIP IOD.15: 2 residues within 4Å: Chain B: L.172, R.173 Ligand excluded by PLIP IOD.16: 3 residues within 4Å: Chain B: S.16, P.17 Chain F: R.18 Ligand excluded by PLIP IOD.19: 2 residues within 4Å: Chain C: R.173 Chain E: G.61 Ligand excluded by PLIP IOD.20: 4 residues within 4Å: Chain C: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.21: 1 residues within 4Å: Chain C: P.38 Ligand excluded by PLIP IOD.22: 2 residues within 4Å: Chain C: N.21 Chain D: R.18 Ligand excluded by PLIP IOD.23: 4 residues within 4Å: Chain C: R.162, M.215, Q.219 Chain E: M.144 Ligand excluded by PLIP IOD.24: 2 residues within 4Å: Chain C: L.172, R.173 Ligand excluded by PLIP IOD.25: 3 residues within 4Å: Chain C: S.16, P.17 Chain D: R.18 Ligand excluded by PLIP IOD.28: 2 residues within 4Å: Chain C: G.61 Chain D: R.173 Ligand excluded by PLIP IOD.29: 4 residues within 4Å: Chain D: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.30: 1 residues within 4Å: Chain D: P.38 Ligand excluded by PLIP IOD.31: 2 residues within 4Å: Chain B: R.18 Chain D: N.21 Ligand excluded by PLIP IOD.32: 4 residues within 4Å: Chain C: M.144 Chain D: R.162, M.215, Q.219 Ligand excluded by PLIP IOD.33: 2 residues within 4Å: Chain D: L.172, R.173 Ligand excluded by PLIP IOD.34: 3 residues within 4Å: Chain B: R.18 Chain D: S.16, P.17 Ligand excluded by PLIP IOD.37: 2 residues within 4Å: Chain A: G.61 Chain E: R.173 Ligand excluded by PLIP IOD.38: 4 residues within 4Å: Chain E: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.39: 1 residues within 4Å: Chain E: P.38 Ligand excluded by PLIP IOD.40: 2 residues within 4Å: Chain C: R.18 Chain E: N.21 Ligand excluded by PLIP IOD.41: 4 residues within 4Å: Chain A: M.144 Chain E: R.162, M.215, Q.219 Ligand excluded by PLIP IOD.42: 2 residues within 4Å: Chain E: L.172, R.173 Ligand excluded by PLIP IOD.43: 3 residues within 4Å: Chain C: R.18 Chain E: S.16, P.17 Ligand excluded by PLIP IOD.46: 2 residues within 4Å: Chain B: G.61 Chain F: R.173 Ligand excluded by PLIP IOD.47: 4 residues within 4Å: Chain F: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.48: 1 residues within 4Å: Chain F: P.38 Ligand excluded by PLIP IOD.49: 2 residues within 4Å: Chain A: R.18 Chain F: N.21 Ligand excluded by PLIP IOD.50: 4 residues within 4Å: Chain B: M.144 Chain F: R.162, M.215, Q.219 Ligand excluded by PLIP IOD.51: 2 residues within 4Å: Chain F: L.172, R.173 Ligand excluded by PLIP IOD.52: 3 residues within 4Å: Chain A: R.18 Chain F: S.16, P.17 Ligand excluded by PLIP

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 3 residues within 4Å: Chain A: N.57 Chain E: P.38, R.173 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain A: I.124 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain B: N.57 Chain F: P.38, R.173 Ligand excluded by PLIP CL.18: 1 residues within 4Å: Chain B: I.124 Ligand excluded by PLIP CL.26: 3 residues within 4Å: Chain C: N.57 Chain D: P.38, R.173 Ligand excluded by PLIP CL.27: 1 residues within 4Å: Chain C: I.124 Ligand excluded by PLIP CL.35: 3 residues within 4Å: Chain B: P.38, R.173 Chain D: N.57 Ligand excluded by PLIP CL.36: 1 residues within 4Å: Chain D: I.124 Ligand excluded by PLIP CL.44: 3 residues within 4Å: Chain C: P.38, R.173 Chain E: N.57 Ligand excluded by PLIP CL.45: 1 residues within 4Å: Chain E: I.124 Ligand excluded by PLIP CL.53: 3 residues within 4Å: Chain A: P.38, R.173 Chain F: N.57 Ligand excluded by PLIP CL.54: 1 residues within 4Å: Chain F: I.124 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gres, A.T. et al., STRUCTURAL VIROLOGY. X-ray crystal structures of native HIV-1 capsid protein reveal conformational variability. Science (2015)

Release Date

2015-06-10

Peptides

HIV-1 capsid protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

HIV-1 capsid protein

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