- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.3: 22 residues within 4Å:- Chain A: A.101, M.102, D.103, I.104, V.106, V.110, D.163, S.165, T.166, E.169, G.237, S.238, Y.239, R.240, S.251, H.252, V.253, I.254, P.256, T.284, V.288
- Ligands: MG.2
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:A.101, A:D.103, A:T.166, A:G.237, A:S.238, A:Y.239, A:R.240, A:I.254
- Water bridges: A:S.165, A:R.240, A:S.251, A:T.284
- Salt bridges: A:R.240, A:R.240
ADP.13: 24 residues within 4Å:- Chain B: A.101, M.102, D.103, I.104, V.106, V.110, F.115, D.163, S.165, T.166, E.169, G.237, S.238, Y.239, R.240, H.252, V.253, I.254, D.255, P.256, T.284, V.288
- Ligands: MG.12, NO3.15
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:A.101, B:D.103, B:S.238, B:Y.239, B:R.240, B:R.240, B:I.254
- Water bridges: B:S.165, B:T.166, B:G.237
- 9 x NO3: NITRATE ION(Non-functional Binders)
NO3.4: 7 residues within 4Å:- Chain A: T.90, R.93, I.94, K.97, E.278, W.282
- Chain B: E.82
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:K.97, A:E.278, B:E.82
- Water bridges: A:W.282
NO3.5: 4 residues within 4Å:- Chain A: P.77, I.145, Q.147, Y.152
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.147
- Water bridges: A:Y.152
NO3.6: 7 residues within 4Å:- Chain A: H.231, I.272, A.273, P.274, F.326
- Chain B: R.178, E.181
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:R.178, B:R.178, B:E.181, A:H.231
- Water bridges: A:A.304, A:A.304
NO3.7: 6 residues within 4Å:- Chain A: D.86, T.89, T.90, R.93
- Chain B: D.86
- Ligands: NO3.8
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:D.86, A:D.86, A:T.90
- Water bridges: A:R.93, B:N.146, B:N.146
NO3.8: 6 residues within 4Å:- Chain A: D.86
- Chain B: D.86, T.89, T.90, R.93
- Ligands: NO3.7
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:D.86, B:D.86, B:T.90, B:R.93
- Water bridges: A:N.146, B:D.86
NO3.14: 4 residues within 4Å:- Chain B: P.77, I.145, Q.147, Y.152
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.147
- Water bridges: B:Y.152
NO3.15: 8 residues within 4Å:- Chain B: T.166, S.236, G.237, V.253, D.283, T.284, M.287
- Ligands: ADP.13
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.237, B:D.283, B:T.284
NO3.16: 7 residues within 4Å:- Chain A: E.82
- Chain B: T.90, R.93, I.94, K.97, E.278, W.282
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain B- Water bridges: A:E.82, B:W.282, B:W.282
- Hydrogen bonds: B:K.97, B:E.278
NO3.17: 7 residues within 4Å:- Chain A: P.274
- Chain B: D.174, A.177, R.178, E.181, R.199
- Ligands: EDO.18
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.181
- Water bridges: B:N.197, B:N.197, B:R.199
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.9: 8 residues within 4Å:- Chain A: D.227, I.228, N.229, H.231, F.326
- Chain B: S.186, R.199, G.200
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Water bridges: B:G.200
- Hydrogen bonds: A:D.227, A:H.231
EDO.10: 7 residues within 4Å:- Chain A: D.174, A.177, R.178, E.181
- Chain B: H.231, P.274
- Ligands: EDO.19
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.178, A:E.181
EDO.18: 5 residues within 4Å:- Chain B: Y.171, D.174, H.175, R.178
- Ligands: NO3.17
No protein-ligand interaction detected (PLIP)EDO.19: 11 residues within 4Å:- Chain A: E.181, Y.188, S.198, R.199, G.230, H.231
- Chain B: R.199, N.229, G.230, H.231
- Ligands: EDO.10
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.230, A:G.230
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Deka, R.K. et al., Molecular insights into the enzymatic diversity of flavin-trafficking protein (Ftp; formerly ApbE) in flavoprotein biogenesis in the bacterial periplasm. Microbiologyopen (2016)
- Release Date
- 2015-12-16
- Peptides
- FAD:protein FMN transferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 9 x NO3: NITRATE ION(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Deka, R.K. et al., Molecular insights into the enzymatic diversity of flavin-trafficking protein (Ftp; formerly ApbE) in flavoprotein biogenesis in the bacterial periplasm. Microbiologyopen (2016)
- Release Date
- 2015-12-16
- Peptides
- FAD:protein FMN transferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B