SMTL ID : 4xhd.2 (1 other biounit)

STRUCTURE OF HUMAN PREGNANE X RECEPTOR LIGAND BINDING DOMAIN WITH COMPOUND-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: T.42, F.43, D.44, F.47, Y.130, M.131, G.134, R.168 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.44, A:G.134, A:R.168 GOL.3: 8 residues within 4Å: Chain B: T.42, F.43, D.44, F.47, Y.130, M.131, G.134, R.168 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.44, B:Y.130, B:G.134, B:R.168

2 x 40U: N-{(2R)-1-[(4S)-4-(4-chlorophenyl)-4-hydroxy-3,3-dimethylpiperidin-1-yl]-3-methyl-1-oxobutan-2-yl}-2-cyclopropylacetamide(Non-covalent)

40U.2: 16 residues within 4Å: Chain A: L.87, L.90, V.92, L.121, M.124, A.125, Q.166, F.169, W.180, C.182, Y.187, M.204, H.288, L.292, F.301, M.306 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.87, A:L.90, A:L.121, A:M.124, A:F.169, A:F.169, A:W.180, A:W.180, A:W.180, A:W.180, A:W.180, A:Y.187, A:Y.187, A:L.292 Hydrogen bonds: A:Q.166, A:H.288 40U.4: 16 residues within 4Å: Chain B: L.87, L.90, V.92, L.121, M.124, A.125, Q.166, F.169, W.180, C.182, Y.187, M.204, H.288, L.292, F.301, M.306 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:L.87, B:L.90, B:L.121, B:M.124, B:F.169, B:F.169, B:W.180, B:W.180, B:W.180, B:W.180, B:W.180, B:Y.187, B:Y.187, B:L.292 Hydrogen bonds: B:Q.166, B:H.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khan, J.A. et al., Developing Adnectins That Target SRC Co-Activator Binding to PXR: A Structural Approach toward Understanding Promiscuity of PXR. J.Mol.Biol. (2015)

Release Date

2015-01-28

Peptides

Nuclear receptor subfamily 1 group I member 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Nuclear receptor subfamily 1 group I member 2

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