- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- monomer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 4 residues within 4Å:- Chain A: K.254, H.255, K.258, A.296
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.254, A:H.255, A:H.255, A:K.258
EDO.4: 6 residues within 4Å:- Chain A: F.124, A.269, Q.270, N.371, M.372, G.375
3 PLIP interactions:3 interactions with chain A- Water bridges: A:Q.270, A:Q.270, A:N.376
EDO.5: 5 residues within 4Å:- Chain A: R.267, G.274, G.275, P.276, S.277
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.275
- Water bridges: A:G.274, A:G.274, A:S.278
EDO.6: 6 residues within 4Å:- Chain A: W.244, A.283, N.287, E.319, S.320, P.321
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.287, A:E.319
- Water bridges: A:W.244, A:E.319
EDO.7: 4 residues within 4Å:- Chain A: A.293, H.294, D.295, E.301
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.301
EDO.8: 5 residues within 4Å:- Chain A: P.123, E.129, R.267, D.268
- Ligands: GTP.12
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.267
- Water bridges: A:E.129, A:K.264, A:S.278
EDO.9: 7 residues within 4Å:- Chain A: M.3, T.4, W.5, E.358, S.359, A.360, L.386
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.358
EDO.10: 3 residues within 4Å:- Chain A: W.271, D.272, V.273
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.272, A:V.273, A:V.273
EDO.11: 8 residues within 4Å:- Chain A: L.24, K.29, S.114, F.115, D.118, T.119, L.120, R.261
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.118, A:D.118, A:L.120, A:R.261
- Water bridges: A:D.118, A:R.261
- 2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
GTP.12: 21 residues within 4Å:- Chain A: Q.112, G.113, S.114, Y.117, L.120, D.131, D.133, S.236, P.238, V.241, K.264, R.267, S.278, I.279, D.322, D.325, L.329
- Ligands: MG.1, MG.2, EDO.8, GTP.13
24 PLIP interactions:24 interactions with chain A- Hydrogen bonds: A:Q.112, A:G.113, A:S.114, A:S.114, A:S.114, A:Y.117, A:Y.117, A:P.238, A:R.267, A:S.278, A:D.322, A:D.322
- Water bridges: A:F.115, A:T.119, A:D.131, A:S.236, A:E.242, A:K.264, A:S.278, A:I.279, A:D.325
- Salt bridges: A:K.264, A:K.264, A:D.325
GTP.13: 14 residues within 4Å:- Chain A: Q.112, D.131, D.133, K.177, T.179, C.180, R.182, D.193, Y.197, L.224, S.236, P.238
- Ligands: MG.2, GTP.12
16 PLIP interactions:16 interactions with chain A- Hydrogen bonds: A:Q.112, A:D.133, A:T.179, A:D.193, A:Y.197, A:Y.197, A:Y.197, A:S.236
- Water bridges: A:R.182, A:R.182, A:R.182
- Salt bridges: A:K.177, A:K.177, A:K.177, A:R.182, A:R.182
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kato, K. et al., Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase. Structure (2015)
- Release Date
- 2015-04-29
- Peptides
- Cyclic AMP-GMP synthase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- monomer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kato, K. et al., Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase. Structure (2015)
- Release Date
- 2015-04-29
- Peptides
- Cyclic AMP-GMP synthase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A