SMTL ID : 4xje.1

CRYSTAL STRUCTURE OF ANT(2") IN COMPLEX WITH AMP AND TOBRAMYCIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 11 residues within 4Å: Chain A: G.35, G.36, D.52, D.54, D.139, Y.140, Y.143, E.146, H.156 Ligands: TOY.2, GOL.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.36, A:D.52 Water bridges: A:W.37, A:D.51, A:D.52, A:H.156 Salt bridges: A:H.156 pi-Stacking: A:Y.143, A:Y.143

1 x TOY: TOBRAMYCIN(Non-covalent)

TOY.2: 11 residues within 4Å: Chain A: D.52, D.54, Y.82, D.94, E.96, I.107, A.108, E.109, D.139, Y.142 Ligands: AMP.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.52, A:D.54, A:D.94, A:E.96, A:D.139 Water bridges: A:D.94, A:D.139

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: G.36, K.49, H.50, D.51, K.155, H.156, S.159 Ligands: AMP.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.36, A:H.50, A:D.51, A:D.51, A:S.159, A:S.159 Water bridges: A:D.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bassenden, A.V. et al., Revisiting the Catalytic Cycle and Kinetic Mechanism of AminoglycosideO-Nucleotidyltransferase(2′′): A Structural and Kinetic Study. Acs Chem.Biol. (2020)

Release Date

2016-01-20

Peptides

AadB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

AadB

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