SMTL ID : 4xjn.1

Structure of the parainfluenza virus 5 nucleocapsid-RNA complex: an insight into paramyxovirus polymerase activity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

homo-13-mer

Ligands

14 x PB: LEAD (II) ION(Non-functional Binders)(Non-covalent)

PB.1: 1 residues within 4Å: Chain N: U.11 No protein-ligand interaction detected (PLIP) PB.2: 1 residues within 4Å: Chain B: E.119 No protein-ligand interaction detected (PLIP) PB.3: 4 residues within 4Å: Chain D: G.401, E.406 Chain I: M.394, R.407 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.406 PB.4: 2 residues within 4Å: Chain G: E.119, R.135 No protein-ligand interaction detected (PLIP) PB.5: 1 residues within 4Å: Chain N: U.47 No protein-ligand interaction detected (PLIP) PB.6: 1 residues within 4Å: Chain I: E.119 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:E.119, I:E.119 PB.7: 1 residues within 4Å: Chain I: E.116 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:E.116, I:E.116 PB.8: 1 residues within 4Å: Chain K: E.119 1 PLIP interactions: 1 interactions with chain K Metal complexes: K:E.119 PB.9: 1 residues within 4Å: Chain K: E.116 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:E.116, K:E.116 PB.10: 2 residues within 4Å: Chain M: E.119 Ligands: PB.11 No protein-ligand interaction detected (PLIP) PB.11: 2 residues within 4Å: Chain M: E.116 Ligands: PB.10 1 PLIP interactions: 1 interactions with chain M Metal complexes: M:E.116 PB.12: 2 residues within 4Å: Chain M: R.240 Chain N: U.5 No protein-ligand interaction detected (PLIP) PB.13: 3 residues within 4Å: Chain M: C.197 Chain N: U.5, U.6 No protein-ligand interaction detected (PLIP) PB.14: 3 residues within 4Å: Chain G: C.197 Chain N: U.53, U.54 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:C.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alayyoubi, M. et al., Structure of the paramyxovirus parainfluenza virus 5 nucleoprotein-RNA complex. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-03-18

Peptides

Nucleocapsid: ABCDEFGHIJKLM

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

Nucleocapsid