- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- monomer
- Ligands
- 1 x NI: NICKEL (II) ION(Non-functional Binders)
- 1 x HIS: HISTIDINE(Non-covalent)
- 1 x 41K: (2R,4R)-2-methyl-1,3-thiazolidine-2,4-dicarboxylic acid(Non-covalent)
41K.3: 14 residues within 4Å:- Chain A: D.28, F.134, R.234, R.325, Y.369, S.370, F.371, G.372, Y.381, I.393
- Ligands: NI.1, HIS.2, GOL.22, NA.23
7 PLIP interactions:6 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:F.371, A:I.393
- Hydrogen bonds: A:R.325, A:G.372
- Salt bridges: A:R.234, A:R.234, H.2
- 1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 18 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 3 residues within 4Å:- Chain A: K.318, K.349, Y.357
Ligand excluded by PLIPGOL.6: 7 residues within 4Å:- Chain A: K.32, T.209, Q.444, K.456, G.461, I.462, Y.463
Ligand excluded by PLIPGOL.7: 4 residues within 4Å:- Chain A: Q.295, I.297, D.338, K.341
Ligand excluded by PLIPGOL.8: 6 residues within 4Å:- Chain A: Y.101, N.384, K.388, K.389, G.391
- Ligands: EPE.4
Ligand excluded by PLIPGOL.9: 6 residues within 4Å:- Chain A: D.260, G.263, I.264, H.267, I.268, V.334
Ligand excluded by PLIPGOL.10: 6 residues within 4Å:- Chain A: E.90, M.93, I.105, S.106, S.107, I.108
Ligand excluded by PLIPGOL.11: 6 residues within 4Å:- Chain A: R.252, Y.398, N.399, N.400, D.433
- Ligands: GOL.18
Ligand excluded by PLIPGOL.12: 7 residues within 4Å:- Chain A: D.256, R.261, T.277, P.290, K.291, T.293, S.431
Ligand excluded by PLIPGOL.13: 10 residues within 4Å:- Chain A: Q.58, N.60, D.61, T.62, T.63, T.119, S.121, A.122, Y.123, L.126
Ligand excluded by PLIPGOL.14: 4 residues within 4Å:- Chain A: Q.148, T.149, K.159, D.160
Ligand excluded by PLIPGOL.15: 3 residues within 4Å:- Chain A: K.41, Y.463, I.465
Ligand excluded by PLIPGOL.16: 4 residues within 4Å:- Chain A: K.226, K.453, N.454, Y.455
Ligand excluded by PLIPGOL.17: 5 residues within 4Å:- Chain A: K.349, V.351, D.352, D.353, Y.357
Ligand excluded by PLIPGOL.18: 8 residues within 4Å:- Chain A: H.242, N.244, K.245, M.247, T.248, K.249, R.252
- Ligands: GOL.11
Ligand excluded by PLIPGOL.19: 4 residues within 4Å:- Chain A: K.54, K.69, D.70, N.71
Ligand excluded by PLIPGOL.20: 6 residues within 4Å:- Chain A: T.109, A.110, K.111, K.114, L.115, T.116
Ligand excluded by PLIPGOL.21: 4 residues within 4Å:- Chain A: E.83, K.86, T.109, A.110
Ligand excluded by PLIPGOL.22: 7 residues within 4Å:- Chain A: L.98, F.134, A.392, I.393, K.395
- Ligands: 41K.3, NA.23
Ligand excluded by PLIP- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lebrette, H. et al., Novel insights into nickel import in Staphylococcus aureus: the positive role of free histidine and structural characterization of a new thiazolidine-type nickel chelator. Metallomics (2015)
- Release Date
- 2015-02-11
- Peptides
- Nickel ABC transporter substrate-binding protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- monomer
- Ligands
- 1 x NI: NICKEL (II) ION(Non-functional Binders)
- 1 x HIS: HISTIDINE(Non-covalent)
- 1 x 41K: (2R,4R)-2-methyl-1,3-thiazolidine-2,4-dicarboxylic acid(Non-covalent)
- 1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 18 x GOL: GLYCEROL(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lebrette, H. et al., Novel insights into nickel import in Staphylococcus aureus: the positive role of free histidine and structural characterization of a new thiazolidine-type nickel chelator. Metallomics (2015)
- Release Date
- 2015-02-11
- Peptides
- Nickel ABC transporter substrate-binding protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A