SMTL ID : 4xlw.4 (3 other biounits)

Complex of Notch1 (EGF11-13) bound to Delta-like 4 (N-EGF2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.39 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.41, V.42, E.44, D.58, Q.59 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.41, A:V.42, A:E.44, A:D.58, A:Q.59 CA.2: 5 residues within 4Å: Chain A: N.79, T.80, E.82, D.96, K.97 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:T.80, A:E.82, A:E.82, A:D.96, A:K.97

3 x BGC: beta-D-glucopyranose(Post Translational Modification)

BGC.3: 5 residues within 4Å: Chain A: E.44, S.47, P.49, F.63, Y.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.44, A:E.44 BGC.5: 4 residues within 4Å: Chain A: E.4, S.24, F.25 Chain B: D.193 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.4, A:E.4, A:F.25, A:R.37, B:D.193 BGC.6: 3 residues within 4Å: Chain A: E.82, S.85, F.101 No protein-ligand interaction detected (PLIP)

1 x FUC: alpha-L-fucopyranose(Post Translational Modification)

FUC.4: 9 residues within 4Å: Chain A: D.53, A.54, T.55, I.66, M.68 Chain B: H.39, Y.40, Q.41, T.89 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.89, B:T.89

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 3 residues within 4Å: Chain B: P.48, C.49, N.53 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:C.49, B:N.53 NAG.8: 3 residues within 4Å: Chain B: E.134, N.136, R.141 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.134, B:E.134, B:N.136, B:R.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luca, V.C. et al., Structural biology. Structural basis for Notch1 engagement of Delta-like 4. Science (2015)

Release Date

2015-03-04

Peptides

Neurogenic locus notch homolog protein 1: A
Delta-like protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

Neurogenic locus notch homolog protein 1

Delta-like protein

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