SMTL ID : 4xnw.1 (1 other biounit)

The human P2Y1 receptor in complex with MRS2500

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x 2ID: [(1R,2S,4S,5S)-4-[2-iodo-6-(methylamino)-9H-purin-9-yl]-2-(phosphonooxy)bicyclo[3.1.0]hex-1-yl]methyl dihydrogen phosphate(Non-covalent)

2ID.1: 17 residues within 4Å: Chain A: C.41, L.43, K.45, Y.109, R.194, T.200, Y.202, D.203, T.204, N.331, A.334, R.335, Q.339, N.347, Y.351, Y.354, R.358 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.43, A:Y.202 Hydrogen bonds: A:Y.109, A:T.200, A:D.203, A:T.204, A:T.204, A:T.204, A:N.331, A:N.331, A:R.335, A:Y.351, A:Y.351 Water bridges: A:T.204, A:Q.355, A:R.358 Salt bridges: A:K.45, A:R.194, A:R.358 pi-Stacking: A:Y.351 Halogen bonds: A:C.41

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.252, C.255, C.285, C.288 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.252, A:C.255, A:C.285, A:C.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, D. et al., Two disparate ligand-binding sites in the human P2Y1 receptor. Nature (2015)

Release Date

2015-04-01

Peptides

P2Y purinoceptor 1,Rubredoxin,P2Y purinoceptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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P2Y purinoceptor 1,Rubredoxin,P2Y purinoceptor 1

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