SMTL ID : 4xp3.1

Crystal structure of ERK2 in complex with an inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x DX4: 2-amino-1,9-dihydro-6H-purine-6-thione(Non-covalent)

DX4.1: 8 residues within 4Å: Chain A: A.43, K.45, Q.96, D.97, L.98, M.99, L.147 Ligands: DMS.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.45, A:D.97, A:M.99, A:M.99

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: Y.178, R.182, R.185, Y.224 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.182, A:R.185, A:Y.224, A:Y.224 Salt bridges: A:R.182, A:R.185

11 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 4 residues within 4Å: Chain A: H.290, K.291, R.292, Q.297 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.297 DMS.4: 6 residues within 4Å: Chain A: D.102, S.144, N.145, L.147, C.157 Ligands: DX4.1 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.102 DMS.5: 3 residues within 4Å: Chain A: T.181, R.182, W.183 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.183 pi-Cation interactions: A:W.183, A:W.183 DMS.6: 3 residues within 4Å: Chain A: Y.104, K.142, S.144 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.144 pi-Cation interactions: A:Y.104 DMS.7: 6 residues within 4Å: Chain A: S.214, R.216, P.217, I.218, L.269, F.270 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.214 DMS.8: 3 residues within 4Å: Chain A: T.109, H.111, N.215 No protein-ligand interaction detected (PLIP) DMS.9: 5 residues within 4Å: Chain A: K.263, W.266, L.278, D.279, D.282 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.279 Salt bridges: A:D.282 DMS.10: 6 residues within 4Å: Chain A: H.111, L.112, I.117, L.213, N.272, A.273 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.274 DMS.11: 5 residues within 4Å: Chain A: R.68, R.70, Y.130, A.316, E.317 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.317 Water bridges: A:A.318 Salt bridges: A:E.317 DMS.12: 5 residues within 4Å: Chain A: L.98, M.99, E.100, N.149, T.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.100, A:T.150 DMS.13: 5 residues within 4Å: Chain A: R.68, P.319, F.320, K.321, F.322 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.68, A:R.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gelin, M. et al., Combining `dry' co-crystallization and in situ diffraction to facilitate ligand screening by X-ray crystallography. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-08-12

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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