- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.27 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x 13D: 1,3-DIAMINOPROPANE(Non-covalent)
13D.2: 11 residues within 4Å:- Chain A: V.113, A.159, N.160, P.161, W.227, E.235, H.294, Y.321, V.398
- Ligands: NAD.1, 13D.3
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.160, A:E.235
- Water bridges: A:N.160, A:E.235, A:E.235
13D.3: 10 residues within 4Å:- Chain A: V.91, D.92, V.113, E.115, Y.121, E.230, G.231, S.234
- Ligands: NAD.1, 13D.2
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:V.91, A:Y.121
- Hydrogen bonds: A:D.92, A:E.115, A:Y.121
- Water bridges: A:D.92, A:S.234, A:S.234
- 2 x 1PS: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE(Non-covalent)
1PS.4: 8 residues within 4Å:- Chain A: F.122, L.237, M.336, F.337, G.340, K.341, R.342
- Chain B: L.455
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.337
- Water bridges: A:R.342
- Salt bridges: A:R.342
1PS.9: 8 residues within 4Å:- Chain A: L.455
- Chain B: F.122, L.237, M.336, F.337, G.340, K.341, R.342
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.237, B:F.337
- Water bridges: B:F.122, B:R.342
- Salt bridges: B:R.342
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.5: 3 residues within 4Å:- Chain A: E.47, D.345, W.346
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:W.346
- Water bridges: A:W.346
ACT.6: 8 residues within 4Å:- Chain A: F.223, V.229, E.230, V.233, M.336, R.342, Q.343, W.346
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.223, A:V.229, A:R.342
- Water bridges: A:S.234, A:R.342
- Salt bridges: A:R.342
ACT.7: 3 residues within 4Å:- Chain A: S.45, D.46, E.47
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.45, A:D.46, A:E.47
- Water bridges: A:P.44
ACT.10: 7 residues within 4Å:- Chain B: F.223, V.229, E.230, V.233, R.342, Q.343, W.346
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:F.223, B:V.229, B:R.342
- Water bridges: B:S.234, B:R.342, B:W.346
- Salt bridges: B:R.342
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Krossa, S. et al., Comprehensive Structural Characterization of the Bacterial Homospermidine Synthase-an Essential Enzyme of the Polyamine Metabolism. Sci Rep (2016)
- Release Date
- 2016-01-27
- Peptides
- Homospermidine synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.27 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x 13D: 1,3-DIAMINOPROPANE(Non-covalent)
- 2 x 1PS: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE(Non-covalent)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Krossa, S. et al., Comprehensive Structural Characterization of the Bacterial Homospermidine Synthase-an Essential Enzyme of the Polyamine Metabolism. Sci Rep (2016)
- Release Date
- 2016-01-27
- Peptides
- Homospermidine synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B