- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.42 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 6 residues within 4Å:- Chain A: C.262, G.263, R.307, Q.312, A.313, R.316
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:A.313
- Water bridges: A:G.263
- Salt bridges: A:R.307, A:R.316
SO4.8: 6 residues within 4Å:- Chain B: C.262, G.263, R.307, Q.312, A.313, R.316
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.313
- Salt bridges: B:R.307, B:R.316
SO4.9: 4 residues within 4Å:- Chain A: P.217, P.219, F.220
- Chain B: R.213
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:R.213
- Hydrogen bonds: A:F.220
- 4 x 1PS: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE(Non-covalent)
1PS.3: 6 residues within 4Å:- Chain A: S.45, D.46, E.47, D.345, W.346, R.347
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.46, A:E.47
- Water bridges: A:P.44
- pi-Stacking: A:W.346
1PS.4: 7 residues within 4Å:- Chain A: L.237, M.336, F.337, G.340, K.341, R.342
- Chain B: L.455
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.337
- Hydrogen bonds: A:R.342
- Salt bridges: A:R.342
1PS.10: 10 residues within 4Å:- Chain A: L.455
- Chain B: Y.121, F.122, R.131, L.237, M.336, F.337, G.340, K.341, R.342
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Water bridges: B:R.342
- Salt bridges: B:R.342
- Hydrophobic interactions: A:L.455
1PS.16: 5 residues within 4Å:- Chain B: E.47, D.345, W.346, R.347, I.348
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:W.346
- Hydrogen bonds: B:I.348
- Water bridges: B:R.347
- pi-Stacking: B:W.346, B:W.346
- 2 x AG2: AGMATINE(Non-covalent)
AG2.5: 11 residues within 4Å:- Chain A: R.137, R.144, R.189, S.299, D.302, F.303, I.417, V.418, E.419, D.421, D.422
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:R.137
- Water bridges: A:S.299, A:D.302, A:D.302, A:D.302, A:D.302, A:F.303, A:A.415, A:E.419
- Salt bridges: A:D.302, A:D.422
AG2.11: 10 residues within 4Å:- Chain B: R.137, R.144, R.189, S.299, D.302, F.303, I.417, V.418, D.421, D.422
13 PLIP interactions:13 interactions with chain B- Hydrogen bonds: B:R.137, B:R.144
- Water bridges: B:R.144, B:D.302, B:D.302, B:D.302, B:D.302, B:F.303, B:A.415, B:E.419, B:E.419
- Salt bridges: B:D.302, B:D.422
- 5 x ACT: ACETATE ION(Non-functional Binders)
ACT.6: 3 residues within 4Å:- Chain A: R.213
- Chain B: P.219, F.220
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:P.219
- Hydrogen bonds: B:F.220
- Salt bridges: A:R.213
ACT.12: 8 residues within 4Å:- Chain B: F.223, V.229, E.230, V.233, R.342, Q.343, D.345, W.346
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:F.223, B:V.229, B:R.342
- Water bridges: B:R.342, B:W.346
- Salt bridges: B:R.342
ACT.13: 7 residues within 4Å:- Chain B: K.169, T.187, W.192, L.423, D.424, F.425, R.426
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:W.192, B:F.425
- Water bridges: B:P.186, B:L.423, B:R.426
- Salt bridges: B:K.169
ACT.14: 9 residues within 4Å:- Chain B: S.165, V.168, K.169, L.172, W.192, I.300, F.303, L.304, D.421
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:V.168, B:K.169, B:F.303, B:L.304
- Hydrogen bonds: B:D.421
- Salt bridges: B:K.169
ACT.15: 3 residues within 4Å:- Chain B: P.3, Y.5, R.427
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.427
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Krossa, S. et al., Comprehensive Structural Characterization of the Bacterial Homospermidine Synthase-an Essential Enzyme of the Polyamine Metabolism. Sci Rep (2016)
- Release Date
- 2016-01-27
- Peptides
- Homospermidine synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.42 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 4 x 1PS: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE(Non-covalent)
- 2 x AG2: AGMATINE(Non-covalent)
- 5 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Krossa, S. et al., Comprehensive Structural Characterization of the Bacterial Homospermidine Synthase-an Essential Enzyme of the Polyamine Metabolism. Sci Rep (2016)
- Release Date
- 2016-01-27
- Peptides
- Homospermidine synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B