SMTL ID : 4xsg.1

The complex structure of C3cer exoenzyme and GTP bound RhoA (NADH-free state)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GSP: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE(Non-covalent)

GSP.1: 21 residues within 4Å: Chain A: D.13, G.14, A.15, C.16, G.17, K.18, T.19, C.20, F.30, V.35, T.37, T.60, A.61, G.62, K.118, D.120, L.121, S.160, A.161, K.162 Ligands: MG.2 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:A.15, A:C.16, A:G.17, A:K.18, A:K.18, A:T.19, A:T.19, A:C.20, A:G.62, A:K.118, A:K.118, A:A.161, A:K.162 Water bridges: A:T.19, A:T.19, A:L.21, A:D.59, A:Q.63 Salt bridges: A:K.18, A:D.120 pi-Stacking: A:F.30, A:F.30

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.19, T.37 Ligands: GSP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.19, A:T.37, H2O.1, H2O.2

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: K.6, A.56 Chain B: R.45, D.175, A.179, P.181 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Water bridges: A:K.6, A:A.56, B:D.175, B:D.175 Hydrogen bonds: B:R.45 EDO.4: 8 residues within 4Å: Chain B: Q.32, F.33, W.36, K.88, G.169, A.170, Y.171, L.186 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.33, B:Y.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toda, A. et al., Rho GTPase Recognition by C3 Exoenzyme Based on C3-RhoA Complex Structure. J.Biol.Chem. (2015)

Release Date

2015-06-24

Peptides

Transforming protein RhoA: A
ADP-ribosyltransferase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming protein RhoA

ADP-ribosyltransferase

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