SMTL ID : 4xsl.1 (1 other biounit)

Crystal strcutre of D-tagatose 3-epimerase C66S from Pseudomonas cichorii in complex with glycerol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: E.152, D.185, H.211, E.246 Ligands: GOL.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.152, A:D.185, A:H.211, A:E.246 MN.6: 5 residues within 4Å: Chain B: E.152, D.185, H.211, E.246 Ligands: GOL.7 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.152, B:D.185, B:H.211, B:E.246

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: W.113, E.152, E.158, D.185, H.188, H.211, R.217, E.246 Ligands: MN.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.158, A:R.217, A:R.217 Water bridges: A:S.66 GOL.3: 5 residues within 4Å: Chain A: W.15, S.37, I.67, G.68, W.113 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.15, A:S.37, A:S.37, A:G.68 Water bridges: A:S.37 GOL.4: 8 residues within 4Å: Chain A: K.204, G.205, K.206, M.207, I.237, G.238, Y.239, D.240 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.205, A:G.205, A:M.207, A:I.237, A:D.240 Water bridges: A:D.240 GOL.5: 3 residues within 4Å: Chain A: P.126, R.130, E.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.130 Water bridges: A:E.133 GOL.7: 9 residues within 4Å: Chain B: W.113, E.152, E.158, D.185, H.188, H.211, R.217, E.246 Ligands: MN.6 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.158, B:R.217, B:R.217 Water bridges: B:S.66, B:S.66 GOL.8: 6 residues within 4Å: Chain B: W.15, S.37, S.66, I.67, G.68, W.113 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:W.15, B:S.37, B:S.37, B:G.68 GOL.9: 8 residues within 4Å: Chain B: K.204, G.205, K.206, M.207, I.237, G.238, Y.239, D.240 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.205, B:G.205, B:M.207, B:I.237, B:D.240, B:D.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, H. et al., X-ray structures of the Pseudomonas cichorii D-tagatose 3-epimerase mutant form C66S recognizing deoxy sugars as substrates. Appl. Microbiol. Biotechnol. (2016)

Release Date

2016-01-27

Peptides

D-tagatose 3-epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D-tagatose 3-epimerase

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