SMTL ID : 4xt3.1

Structure of a viral GPCR bound to human chemokine CX3CL1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-NAG.1: 4 residues within 4Å: Chain B: N.9, I.10, Q.28, Q.31 No protein-ligand interaction detected (PLIP)

1 x UNL: UNKNOWN LIGAND

UNL.2: 2 residues within 4Å: Chain A: F.162, I.165 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.162, A:I.165

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 2 residues within 4Å: Chain A: H.230, R.236 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.230, A:R.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burg, J.S. et al., Structural biology. Structural basis for chemokine recognition and activation of a viral G protein-coupled receptor. Science (2015)

Release Date

2015-03-04

Peptides

G-protein coupled receptor homolog US28: A
Fractalkine: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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G-protein coupled receptor homolog US28

Fractalkine

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