SMTL ID : 4xv5.1

CcP gateless cavity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 21 residues within 4Å: Chain A: P.44, V.45, R.48, W.51, P.145, D.146, A.147, L.171, M.172, A.174, H.175, L.177, G.178, K.179, T.180, H.181, N.184, S.185, L.230, T.232 Ligands: BZI.2 25 PLIP interactions: 24 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:R.48, A:W.51, A:W.51, A:W.51, A:P.145, A:A.147, A:L.171, A:A.174, A:T.180 Hydrogen bonds: A:K.179, A:H.181, A:N.184 Water bridges: A:D.37, A:D.37, A:D.37, A:R.48, A:A.83, A:H.181 Salt bridges: A:R.48, A:H.181, A:H.181 pi-Stacking: A:W.51 pi-Cation interactions: A:R.48 Metal complexes: A:H.175, H2O.4

2 x BZI: BENZIMIDAZOLE(Non-covalent)

BZI.2: 10 residues within 4Å: Chain A: H.175, L.177, G.178, K.179, T.180, M.228, M.229, L.230, D.233 Ligands: HEM.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:H.175, A:T.180, A:L.230 Hydrogen bonds: A:D.233 Water bridges: A:M.228, A:M.228 pi-Stacking: A:H.175 BZI.3: 7 residues within 4Å: Chain A: F.89, L.92, E.93, H.96, S.104, L.107, F.108 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.89, A:F.89, A:L.92, A:E.93, A:L.107, A:F.108 pi-Stacking: A:H.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fischer, M. et al., One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites. Chembiochem (2015)

Release Date

2015-02-25

Peptides

Cytochrome c peroxidase, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome c peroxidase, mitochondrial

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