SMTL ID : 4xvm.1

Binary complex of human polymerase nu and DNA with the finger domain closed and thumb domain rotated out

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x DC- DT- DA- DG- DC- DG- DT- DC- DA: DNA (5'-D(*CP*TP*AP*GP*CP*GP*TP*CP*A)-3')(Non-covalent)

DC-DT-DA-DG-DC-DG-DT-DC-DA.1: 36 residues within 4Å: Chain A: N.288, S.320, T.321, R.343, H.346, K.347, S.350, T.351, T.374, V.375, S.380, A.381, K.382, H.383, N.385, Y.489, A.490, Y.493, A.495, G.496, R.499, R.550, R.568, Q.569, N.572, Q.576 Chain B: T.4, T.5, G.6, A.7, C.8, G.9, C.10, T.11, A.12, G.13 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:E.435, A:Y.489, A:H.609 Hydrogen bonds: A:R.378, A:R.378, A:K.391, A:E.435, A:K.486, A:H.609, A:D.610, A:D.610 Salt bridges: A:R.415 pi-Stacking: A:Y.489, A:Y.489

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, Y.S. et al., How a homolog of high-fidelity replicases conducts mutagenic DNA synthesis. Nat.Struct.Mol.Biol. (2015)

Release Date

2015-03-11

Peptides

DNA polymerase nu: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase nu

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