SMTL ID : 4xx8.1

Crystal structure of Pro1 deletion mutant of human macrophage migration inhibitory factor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-trimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.67, G.68, A.69, Q.70 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.68, A:A.69, A:Q.70, A:Q.70 SO4.3: 4 residues within 4Å: Chain B: G.67, G.68, A.69, Q.70 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.68, B:A.69, B:Q.70, B:Q.70 SO4.4: 2 residues within 4Å: Chain B: G.64, K.65 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.65 Water bridges: B:I.66 SO4.6: 4 residues within 4Å: Chain C: G.67, G.68, A.69, Q.70 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.67, C:G.68, C:A.69, C:Q.70, C:Q.70 Water bridges: C:R.72 SO4.7: 2 residues within 4Å: Chain C: G.64, K.65 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.65 Water bridges: C:I.66

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: M.1, H.61, S.62, I.63, M.100 Chain C: N.96 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:N.96, C:N.96, A:I.63 GOL.5: 7 residues within 4Å: Chain A: Y.94, N.96 Chain B: M.1, H.61, S.62, I.63, V.105 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.96, A:N.96, B:I.63 GOL.8: 7 residues within 4Å: Chain B: Y.94, N.96 Chain C: M.1, H.61, S.62, I.63, V.105 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:N.96, B:N.96, C:H.61, C:I.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pantouris, G. et al., An Analysis of MIF Structural Features that Control Functional Activation of CD74. Chem.Biol. (2015)

Release Date

2015-09-30

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor