- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 4 residues within 4Å:- Chain A: E.125, D.127, D.134, H.139
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.125, A:D.127, A:D.134, A:H.139, H2O.2, H2O.3
MN.6: 4 residues within 4Å:- Chain B: E.125, D.127, D.134, H.139
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.125, B:D.127, B:D.134, B:H.139, H2O.4, H2O.6
MN.10: 4 residues within 4Å:- Chain C: E.125, D.127, D.134, H.139
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.125, C:D.127, C:D.134, C:H.139, H2O.8, H2O.9
MN.14: 4 residues within 4Å:- Chain D: E.125, D.127, D.134, H.139
6 PLIP interactions:4 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.125, D:D.127, D:D.134, D:H.139, H2O.10, H2O.12
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 8 residues within 4Å:- Chain A: A.88, D.89, G.107, F.129, N.131, G.214, L.215, S.216
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.107, A:N.131, A:N.131, A:L.215, A:S.216, A:S.216
GOL.7: 8 residues within 4Å:- Chain B: A.88, D.89, G.106, G.107, F.129, N.131, G.214, L.215
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.89, B:G.107, B:N.131, B:L.215
GOL.11: 8 residues within 4Å:- Chain C: A.88, D.89, G.107, F.129, N.131, G.214, L.215, S.216
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:G.107, C:N.131, C:N.131, C:L.215, C:S.216, C:S.216
GOL.15: 8 residues within 4Å:- Chain D: A.88, D.89, G.106, G.107, F.129, N.131, G.214, L.215
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:D.89, D:G.107, D:N.131, D:L.215
- 4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.4: 4 residues within 4Å:- Chain A: H.47, K.104, D.105, L.215
No protein-ligand interaction detected (PLIP)1PE.8: 3 residues within 4Å:- Chain B: E.80, N.159, G.160
No protein-ligand interaction detected (PLIP)1PE.12: 4 residues within 4Å:- Chain C: H.47, K.104, D.105, L.215
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.105
1PE.16: 3 residues within 4Å:- Chain D: E.80, N.159, G.160
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:E.80
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sousa, B.L. et al., Crystal structure of a recombinant Vatairea macrocarpa seed lectin. Int.J.Biochem.Cell Biol. (2016)
- Release Date
- 2016-01-27
- Peptides
- Seed lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sousa, B.L. et al., Crystal structure of a recombinant Vatairea macrocarpa seed lectin. Int.J.Biochem.Cell Biol. (2016)
- Release Date
- 2016-01-27
- Peptides
- Seed lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B