SMTL ID : 4xxt.1

Crystal structure of Fused Zn-dependent amidase/peptidase/peptodoglycan-binding domain-containing protein from Clostridium acetobutylicum ATCC 824

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: A.125, L.129, E.149, Y.153 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.149, A:E.149 EDO.2: 2 residues within 4Å: Chain A: R.183, W.259 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.183, A:R.183 Water bridges: A:N.133 EDO.3: 2 residues within 4Å: Chain A: S.48, D.51 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.51

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 9 residues within 4Å: Chain A: D.76, K.80, V.107, K.189, Y.249, D.250, T.251, L.252, P.253 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.76 Water bridges: A:K.80 Salt bridges: A:K.80, A:K.189

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 4 residues within 4Å: Chain A: C.170, T.171, I.216, R.239 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.171 Water bridges: A:A.241 IMD.6: 2 residues within 4Å: Chain A: D.103, R.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of Fused Zn-dependent amidase/peptidase/peptodoglycan-binding domain-containing protein from from Clostridium acetobutylicum ATCC 824. To Be Published

Release Date

2015-02-18

Peptides

Fusion of predicted Zn-dependent amidase/peptidase (Cell wall hydrolase/DD-carboxypeptidase family) and uncharacterized domain of ErfK family peptodoglycan-binding domain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fusion of predicted Zn-dependent amidase/peptidase (Cell wall hydrolase/DD-carboxypeptidase family) and uncharacterized domain of ErfK family peptodoglycan-binding domain