SMTL ID : 4xxv.1

Crystal structure of 3-isopropylmalate dehydrogenase from Burkholderia thailandensis in complex with NAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 26 residues within 4Å: Chain A: N.200, Y.228, N.231, M.234 Chain B: I.19, F.73, A.75, V.76, G.77, D.78, W.79, E.91, I.267, G.268, E.284, H.287, G.288, S.289, A.290, P.291, D.292, I.293, A.299, N.300, D.341 Ligands: GOL.2 21 PLIP interactions: 14 interactions with chain B, 7 interactions with chain A Hydrogen bonds: B:V.76, B:R.98, B:E.284, B:G.288, B:G.288, B:S.289, B:A.290, B:D.292, B:N.300, B:N.300, A:N.200, A:N.231 Water bridges: B:D.78, B:A.303, A:Y.228, A:Y.228, A:N.231, A:Q.235, A:Q.235 pi-Stacking: B:H.287, B:H.287

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: K.198 Chain B: R.98, R.108, R.136, Y.143, D.254, S.286 Ligands: NAD.1 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.98, B:R.98, B:R.108, B:R.108, B:R.136, B:R.136, B:S.286 Water bridges: A:D.230, A:D.230 GOL.3: 5 residues within 4Å: Chain B: F.107, L.133, L.275, M.310, Y.314 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seattle Structural Genomics Center for Infectious Disease (SSGCID) et al., Crystal structure of 3-isopropylmalate dehydrogenase from Burkholderia thailandensis in complex with NAD. to be published

Release Date

2015-02-25

Peptides

3-isopropylmalate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-isopropylmalate dehydrogenase

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