SMTL ID : 4xyn.2 (1 other biounit)

X-ray structure of Ca(2+)-S100B with human RAGE-derived W61 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 8 residues within 4Å: Chain A: S.19, E.22, D.24, K.25, K.27, L.28, K.29, E.32 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.19, A:E.22, A:D.24, A:K.27, A:E.32, H2O.1 CA.2: 8 residues within 4Å: Chain A: D.62, D.64, D.66, G.67, E.68, C.69, D.70, E.73 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.62, A:D.64, A:E.68, A:E.73, H2O.1 CA.3: 8 residues within 4Å: Chain B: S.19, E.22, D.24, K.25, K.27, L.28, K.29, E.32 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:S.19, B:E.22, B:D.24, B:K.27, B:E.32 CA.4: 7 residues within 4Å: Chain B: D.62, D.64, D.66, G.67, E.68, C.69, E.73 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.62, B:D.64, B:D.66, B:E.68, B:E.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jensen, J.L. et al., Structural insights into the binding of the human receptor for advanced glycation end products (RAGE) by S100B, as revealed by an S100B-RAGE-derived peptide complex. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-05-13

Peptides

Protein S100-B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Protein S100-B

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