SMTL ID : 4xyx.1

NanB plus Optactamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 43Z: Optactamide(Non-covalent)

43Z.1: 9 residues within 4Å: Chain A: Y.211, T.212, Q.455, I.557, S.560, T.618, E.619, L.620, H.623 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.211, A:E.619, A:E.619 Hydrogen bonds: A:T.212, A:T.212, A:Q.455, A:Q.455, A:T.618 Water bridges: A:K.558, A:E.619

18 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: R.90, E.126, V.127, R.271, H.641, L.642, S.643 Ligand excluded by PLIP PO4.3: 5 residues within 4Å: Chain A: S.215, G.216, D.244, N.246, P.621 Ligand excluded by PLIP PO4.4: 4 residues within 4Å: Chain A: S.199, P.253, I.254, F.255 Ligand excluded by PLIP PO4.5: 6 residues within 4Å: Chain A: F.255, A.256, M.257, K.258, W.432, Q.434 Ligand excluded by PLIP PO4.6: 5 residues within 4Å: Chain A: V.346, G.350, I.365, N.366, Y.369 Ligand excluded by PLIP PO4.7: 8 residues within 4Å: Chain A: R.206, I.207, R.225, D.231, I.287, D.288, E.502, Y.614 Ligand excluded by PLIP PO4.8: 3 residues within 4Å: Chain A: K.274, N.277, S.278 Ligand excluded by PLIP PO4.9: 4 residues within 4Å: Chain A: L.186, S.187, N.188 Ligands: PO4.17 Ligand excluded by PLIP PO4.10: 6 residues within 4Å: Chain A: L.45, F.66, R.68, E.76, L.87, Y.160 Ligand excluded by PLIP PO4.11: 4 residues within 4Å: Chain A: N.85, Y.86, L.87, F.88 Ligand excluded by PLIP PO4.12: 2 residues within 4Å: Chain A: H.396, D.409 Ligand excluded by PLIP PO4.13: 4 residues within 4Å: Chain A: K.488, K.489, S.490, E.534 Ligand excluded by PLIP PO4.14: 5 residues within 4Å: Chain A: Y.121, G.124, D.178, V.181, S.182 Ligand excluded by PLIP PO4.15: 5 residues within 4Å: Chain A: Y.330, P.439, P.440, F.441, W.487 Ligand excluded by PLIP PO4.16: 6 residues within 4Å: Chain A: N.123, G.124, I.125, L.186, N.188, L.192 Ligand excluded by PLIP PO4.17: 6 residues within 4Å: Chain A: S.182, T.183, I.184, P.185, L.186 Ligands: PO4.9 Ligand excluded by PLIP PO4.18: 8 residues within 4Å: Chain A: M.422, K.436, L.437, L.438, P.439, G.484, Q.485, W.487 Ligand excluded by PLIP PO4.19: 3 residues within 4Å: Chain A: G.57, K.59, N.60 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brear, P. et al., The Hunt for Serendipitous Allosteric Sites: Discovery of a novel allosteric inhibitor of the bacterial sialidase NanB. To Be Published

Release Date

2016-02-10

Peptides

Sialidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sialidase B