SMTL ID : 4y0a.1

Shikimate kinase from Acinetobacter baumannii in complex with shikimate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x SKM: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID(Non-covalent)

SKM.1: 14 residues within 4Å: Chain A: M.17, D.40, I.51, F.55, F.63, R.64, G.85, G.86, G.87, R.124, P.125, L.126, L.139, R.143 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.40, A:D.40, A:G.86, A:R.124 Water bridges: A:R.64, A:E.67, A:G.85, A:R.143 Salt bridges: A:R.64, A:R.143

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: P.110, V.111, E.112, R.137 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.111, A:E.112 Water bridges: A:R.137 Salt bridges: A:R.137 SO4.3: 8 residues within 4Å: Chain A: P.16, M.17, G.18, A.19, G.20, K.21, T.22, R.124 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.18, A:A.19, A:G.20, A:K.21, A:T.22, A:T.22, A:T.22 Water bridges: A:K.21, A:R.124, A:R.124, A:R.124, A:R.124 Salt bridges: A:K.21, A:R.124 SO4.4: 4 residues within 4Å: Chain A: L.113, R.117, Q.159, G.160 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.160, A:G.160 Water bridges: A:R.117 Salt bridges: A:R.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sutton, K.A. et al., Structure of shikimate kinase, an in vivo essential metabolic enzyme in the nosocomial pathogen Acinetobacter baumannii, in complex with shikimate. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-08-12

Peptides

Shikimate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Shikimate kinase