SMTL ID : 4y1b.1

Structure of crotonyl-CoA carboxylase/reductase AntE V350A in complex with NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 25 residues within 4Å: Chain A: Y.84, A.202, T.203, T.206, W.228, G.229, G.232, G.233, L.234, V.253, S.254, R.258, R.273, H.321, S.322, D.325, T.326, C.343, G.344, T.346, T.347, H.369, A.370, H.413 Chain C: W.359 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:T.206, A:L.234 Hydrogen bonds: A:T.206, A:G.233, A:L.234, A:S.254, A:D.325, A:D.325, A:H.369, A:A.370 Water bridges: A:G.229, A:G.232, A:G.235, A:V.252, A:S.254, A:R.258, A:R.258, A:R.273, A:R.273, A:R.273, A:R.273, A:H.321, A:G.345, A:N.411, A:H.413 Salt bridges: A:R.258, A:R.273, A:H.413 pi-Cation interactions: A:R.273, A:R.273 NAP.2: 25 residues within 4Å: Chain B: Y.84, A.202, T.203, T.206, W.228, G.229, G.232, G.233, L.234, V.253, S.254, R.258, R.273, H.321, S.322, D.325, T.326, C.343, G.344, T.346, T.347, H.369, A.370, H.413 Chain D: W.359 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:T.206, B:L.234 Hydrogen bonds: B:T.206, B:G.233, B:L.234, B:S.254, B:D.325, B:D.325, B:H.369, B:A.370 Water bridges: B:G.229, B:G.232, B:G.235, B:V.252, B:S.254, B:R.258, B:R.258, B:R.273, B:R.273, B:R.273, B:R.273, B:H.321, B:G.345, B:N.411, B:H.413 Salt bridges: B:R.258, B:R.273, B:H.413 pi-Cation interactions: B:R.273, B:R.273 NAP.3: 25 residues within 4Å: Chain A: W.359 Chain C: Y.84, A.202, T.203, T.206, W.228, G.229, G.232, G.233, L.234, V.253, S.254, R.258, R.273, H.321, S.322, D.325, T.326, C.343, G.344, T.346, T.347, H.369, A.370, H.413 29 PLIP interactions: 29 interactions with chain C Hydrophobic interactions: C:T.206, C:L.234 Hydrogen bonds: C:Y.84, C:T.206, C:G.233, C:L.234, C:S.254, C:D.325, C:H.369, C:A.370 Water bridges: C:G.229, C:G.232, C:G.235, C:V.252, C:S.254, C:R.258, C:R.258, C:R.273, C:R.273, C:R.273, C:R.273, C:G.345, C:N.411, C:H.413 Salt bridges: C:R.258, C:R.273, C:H.413 pi-Cation interactions: C:R.273, C:R.273 NAP.4: 25 residues within 4Å: Chain B: W.359 Chain D: Y.84, A.202, T.203, T.206, W.228, G.229, G.232, G.233, L.234, V.253, S.254, R.258, R.273, H.321, S.322, D.325, T.326, C.343, G.344, T.346, T.347, H.369, A.370, H.413 29 PLIP interactions: 29 interactions with chain D Hydrophobic interactions: D:T.206, D:L.234 Hydrogen bonds: D:Y.84, D:T.206, D:G.233, D:L.234, D:S.254, D:D.325, D:H.369, D:A.370 Water bridges: D:G.229, D:G.232, D:G.235, D:V.252, D:S.254, D:R.258, D:R.258, D:R.273, D:R.273, D:R.273, D:R.273, D:G.345, D:N.411, D:H.413 Salt bridges: D:R.258, D:R.273, D:H.413 pi-Cation interactions: D:R.273, D:R.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, L. et al., Rational Control of Polyketide Extender Units by Structure-Based Engineering of a Crotonyl-CoA Carboxylase/Reductase in Antimycin Biosynthesis. Angew.Chem.Int.Ed.Engl. (2015)

Release Date

2015-09-23

Peptides

AntE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

AntE