SMTL ID : 4y2s.1

Structure of soluble epoxide hydrolase in complex with 1-[3-(trifluoromethyl)phenyl]-1H-pyrazol-4-ol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.9, D.11, D.184, D.185, I.186 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.9, A:D.11, A:D.185 MG.3: 5 residues within 4Å: Chain B: D.9, D.11, D.184, D.185, I.186 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.9, B:D.11, B:D.185

2 x 49P: 1-[3-(trifluoromethyl)phenyl]-1H-pyrazol-4-ol(Non-covalent)

49P.2: 14 residues within 4Å: Chain A: F.267, P.268, D.335, Y.383, F.387, L.408, M.419, Y.466, K.495, D.496, F.497, V.498, H.524, W.525 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.383, A:V.498 Hydrogen bonds: A:D.496, A:F.497, A:V.498 Halogen bonds: A:Y.466 49P.4: 14 residues within 4Å: Chain B: F.267, P.268, D.335, Y.383, F.387, L.408, M.419, Y.466, K.495, D.496, F.497, V.498, H.524, W.525 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.383, B:V.498 Hydrogen bonds: B:F.497, B:V.498 Halogen bonds: B:Y.466

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amano, Y. et al., Identification of N-ethylmethylamine as a novel scaffold for inhibitors of soluble epoxide hydrolase by crystallographic fragment screening. Bioorg.Med.Chem. (2015)

Release Date

2015-05-06

Peptides

Bifunctional epoxide hydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bifunctional epoxide hydrolase 2

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