SMTL ID : 4y33.1

Crystal of NO66 in complex with Ni(II)and N-oxalylglycine (NOG)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

4 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.165, D.167, H.230 Ligands: OGA.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.165, A:D.167, A:H.230 NI.3: 4 residues within 4Å: Chain B: H.165, D.167, H.230 Ligands: OGA.4 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.167, B:H.230 NI.5: 4 residues within 4Å: Chain C: H.165, D.167, H.230 Ligands: OGA.6 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.165, C:D.167, C:H.230 NI.7: 3 residues within 4Å: Chain D: H.165, D.167, H.230 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.167, D:H.230

3 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.2: 11 residues within 4Å: Chain A: Y.153, F.162, H.165, D.167, K.180, W.182, H.230, A.232, H.242, T.244 Ligands: NI.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.153, A:T.244 Water bridges: A:G.161 Salt bridges: A:K.180, A:H.230, A:H.242, A:H.242 OGA.4: 11 residues within 4Å: Chain B: Y.153, F.162, H.165, D.167, K.180, W.182, H.230, A.232, H.242, T.244 Ligands: NI.3 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.153, B:A.232 Salt bridges: B:K.180, B:H.230, B:H.242, B:H.242 OGA.6: 12 residues within 4Å: Chain C: Y.153, T.155, F.162, H.165, D.167, K.180, W.182, H.230, A.232, H.242, T.244 Ligands: NI.5 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:A.232, C:H.242 Salt bridges: C:K.180, C:H.230, C:H.242, C:H.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, C. et al., Structure of the JmjC domain-containing protein NO66 complexed with ribosomal protein Rpl8. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-10-07

Peptides

Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66

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