SMTL ID : 4y4r.1

Crystal structure of ribosomal oxygenase NO66 dimer mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-dimer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.165, D.167, H.230 Ligands: ACT.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.165, A:D.167, A:H.230, H2O.1 NI.3: 3 residues within 4Å: Chain B: H.165, D.167, H.230 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.165, B:D.167, B:H.230, H2O.1, H2O.1

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: Y.153, H.165, H.242, T.244 Ligands: NI.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.153, A:T.244 Hydrogen bonds: A:Y.153 Salt bridges: A:H.165, A:H.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, C. et al., Structure of the JmjC domain-containing protein NO66 complexed with ribosomal protein Rpl8. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-10-07

Peptides

Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66