SMTL ID : 4y59.1

Crystal structure of ALiS1-Streptavidin complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.22 Å

Oligo State

homo-tetramer

Ligands

4 x T21: 2-[3-(trifluoromethyl)phenyl]furo[3,2-c]pyridin-4(5H)-one(Non-covalent)

T21.1: 17 residues within 4Å: Chain A: N.9, S.13, Y.29, S.31, V.33, G.34, N.35, A.36, W.65, A.72, S.74, T.76, W.78, W.94, L.96, D.114 Chain D: W.106 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.33, A:A.36, A:W.65 Hydrogen bonds: A:N.9, A:S.13, A:Y.29, A:D.114 pi-Stacking: A:W.65, A:W.65, A:W.78, A:W.94, A:W.94 Halogen bonds: A:S.74 T21.2: 12 residues within 4Å: Chain B: N.9, S.13, Y.29, W.65, A.72, S.74, T.76, W.78, W.94, L.96, D.114 Chain C: W.106 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:W.65 Hydrogen bonds: B:S.13, B:D.114 pi-Stacking: B:W.65, B:W.65, B:W.78, B:W.94, B:W.94 Halogen bonds: B:S.74 T21.3: 13 residues within 4Å: Chain B: W.106 Chain C: N.9, S.13, Y.29, S.31, W.65, A.72, S.74, T.76, W.78, W.94, L.96, D.114 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:W.65 Hydrogen bonds: C:S.13, C:D.114 pi-Stacking: C:W.65, C:W.65, C:W.78, C:W.94, C:W.94 Halogen bonds: C:S.74 T21.4: 11 residues within 4Å: Chain A: W.106 Chain D: N.9, S.13, Y.29, W.65, A.72, S.74, W.78, W.94, L.96, D.114 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:W.65 Hydrogen bonds: D:N.9, D:S.13, D:Y.29, D:D.114 pi-Stacking: D:W.65, D:W.65, D:W.78, D:W.94, D:W.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Terai, T. et al., Artificial Ligands of Streptavidin (ALiS): Discovery, Characterization, and Application for Reversible Control of Intracellular Protein Transport. J.Am.Chem.Soc. (2015)

Release Date

2015-09-23

Peptides

Streptavidin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Streptavidin

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