SMTL ID : 4y5t.1

Structure of FtmOx1 apo with metal Iron

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x FE2: FE (II) ION(Non-covalent)

FE2.1: 3 residues within 4Å: Chain A: H.132, D.134, H.208 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.132, A:D.134, A:H.208, H2O.2, H2O.2, H2O.7 FE2.4: 3 residues within 4Å: Chain B: H.132, D.134, H.208 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.132, B:D.134, B:H.208, H2O.9, H2O.9, H2O.14

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: P.61, K.62, G.63, R.65 Chain B: K.279 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.62, A:G.63 Salt bridges: A:R.65, B:K.279 SO4.3: 5 residues within 4Å: Chain A: I.122, T.169, G.210, R.221, V.223 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.169, A:G.211 Water bridges: A:R.221, A:R.221 Salt bridges: A:R.221

1 x CO: COBALT (II) ION(Non-covalent)

CO.5: 2 residues within 4Å: Chain B: E.185, D.187 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.185, B:D.187, H2O.8

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.6: 9 residues within 4Å: Chain A: P.268, N.269, I.270, V.271 Chain B: D.134, D.135, A.136, T.137, Y.227 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:I.270, A:V.271, B:A.136, B:T.137 Water bridges: B:Y.227, B:Y.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, W. et al., Endoperoxide formation by an alpha-ketoglutarate-dependent mononuclear non-haem iron enzyme. Nature (2015)

Release Date

2015-11-04

Peptides

Verruculogen synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Verruculogen synthase

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