SMTL ID : 4y63.1

AAGlyB in complex with amino-acid analogues

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x BHE: octyl 2-O-(6-deoxy-alpha-L-galactopyranosyl)-beta-D-galactopyranoside(Non-covalent)

BHE.1: 10 residues within 4Å: Chain A: H.233, G.235, F.236, T.245, Y.264, W.300, E.303, D.326, L.329, A.343 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.236, A:D.326 Hydrogen bonds: A:T.245, A:E.303, A:D.326 Salt bridges: A:H.233, A:H.233

1 x 48O: 5'-deoxy-5'-{[(2S)-2-(triaza-1,2-dien-2-ium-1-yl)propanoyl]amino}uridine(Non-covalent)

48O.2: 13 residues within 4Å: Chain A: F.121, A.122, I.123, K.124, Y.126, W.181, V.184, S.185, R.188, D.211, V.212, D.213 Ligands: MN.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.184 Hydrogen bonds: A:F.121, A:F.121, A:I.123, A:I.123, A:V.212, A:D.213, A:D.213 Water bridges: A:K.124, A:S.185, A:R.188, A:D.211 pi-Stacking: A:Y.126

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 2 residues within 4Å: Chain A: D.213 Ligands: 48O.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.213, H2O.1, H2O.2, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, S. et al., Design of Glycosyltransferase Inhibitors: Serine Analogues as Pyrophosphate Surrogates?. Chempluschem (2015)

Release Date

2015-09-16

Peptides

Histo-blood group ABO system transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histo-blood group ABO system transferase

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