SMTL ID : 4y7l.1

T6SS protein TssM C-terminal domain (869-1107) from EAEC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: L.46, N.47, T.48, I.53, A.54, W.72, L.95, S.96, A.99 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.48 Water bridges: A:A.54, A:R.67 GOL.2: 9 residues within 4Å: Chain A: T.104, T.105, G.109, L.110, H.111 Chain B: T.105, G.109, L.110, H.111 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.104, B:G.109 Water bridges: A:T.104, A:H.111 GOL.5: 9 residues within 4Å: Chain B: L.46, N.47, T.48, I.53, W.72, I.92, L.95, S.96, A.99 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.72 Water bridges: B:T.48, B:S.96

4 x ZN: ZINC ION(Non-covalent)

ZN.3: 2 residues within 4Å: Chain A: D.49 Chain B: N.131 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.49, A:D.49, H2O.1, H2O.1, H2O.7 ZN.4: 5 residues within 4Å: Chain A: H.111, R.145, E.218 Chain B: H.111, E.218 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:E.218, B:E.218, A:E.218, H2O.10 ZN.6: 2 residues within 4Å: Chain B: E.185, R.230 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.185, H2O.19, H2O.19, H2O.19 ZN.7: 2 residues within 4Å: Chain A: N.131 Chain B: D.49 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.49, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Durand, E. et al., Biogenesis and structure of a type VI secretion membrane core complex. Nature (2015)

Release Date

2015-08-05

Peptides

Type VI secretion protein IcmF: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Type VI secretion protein IcmF

Related Entries With Identical Sequence