SMTL ID : 4y90.1 (1 other biounit)

Crystal structure of Triosephosphate Isomerase from Deinococcus radiodurans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: K.13, A.168, I.169, G.170, G.208, S.209, V.210, G.230, G.231 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.170, A:S.209, A:S.209, A:V.210, A:G.230, A:G.231 Water bridges: A:K.13, A:E.164, A:G.170, A:G.208 Salt bridges: A:K.13 SO4.6: 9 residues within 4Å: Chain B: K.13, A.168, I.169, G.170, G.208, S.209, V.210, G.230, G.231 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.170, B:S.209, B:S.209, B:V.210, B:G.230, B:G.231 Water bridges: B:K.13, B:K.13 Salt bridges: B:K.13 SO4.7: 5 residues within 4Å: Chain B: H.70, E.71, S.72, Y.75, Q.116 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.71, B:S.72, B:S.72, B:Q.116 Salt bridges: B:H.70

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: H.70, E.71, S.72, G.73, Y.75, Q.116 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.70, A:E.71, A:S.72, A:S.72, A:Y.75, A:Q.116 Water bridges: A:A.69 GOL.3: 2 residues within 4Å: Chain A: H.140, E.182 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.140, A:E.182 Water bridges: A:E.182 GOL.4: 3 residues within 4Å: Chain A: R.192, E.193, G.196 No protein-ligand interaction detected (PLIP) GOL.8: 11 residues within 4Å: Chain A: G.77, I.79 Chain B: A.46, D.66, V.67, S.68, G.77, E.78, I.79, R.99, K.113 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.66, B:I.79 Water bridges: B:D.66, B:E.78, B:R.99, B:R.99, B:R.99, A:G.77 GOL.9: 4 residues within 4Å: Chain B: P.34, A.35, E.36, R.247 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.36, B:R.247 Water bridges: B:E.36, B:E.36, B:R.247 GOL.10: 4 residues within 4Å: Chain B: Y.195, G.196, A.197, R.198 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.195, B:A.197, B:R.198, B:R.198, B:R.198

3 x CA: CALCIUM ION(Non-covalent)

CA.5: 6 residues within 4Å: Chain A: N.11, K.13, H.96, E.164, L.228, G.230 No protein-ligand interaction detected (PLIP) CA.11: 6 residues within 4Å: Chain B: N.11, K.13, H.96, E.164, L.228, G.230 No protein-ligand interaction detected (PLIP) CA.12: 4 residues within 4Å: Chain B: C.219, K.221, V.224, N.225 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.219, B:K.221, B:V.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Romero-Romero, S. et al., Reversibility and two state behaviour in the thermal unfolding of oligomeric TIM barrel proteins. Phys Chem Chem Phys (2015)

Release Date

2015-07-15

Peptides

Triosephosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Triosephosphate isomerase

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