SMTL ID : 4y92.1

Crystal structure of the intertwined form of the Src tyrosine kinase SH3 domain E97T-Q128R mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 12 residues within 4Å: Chain A: R.15, T.18, W.38, Y.51 Chain B: Y.12, R.15, T.16, T.18, D.19, W.38, Y.51 Ligands: PGE.7 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Y.12, B:R.15, B:D.19, B:D.19, A:R.15, A:T.18, A:Y.51 Water bridges: A:T.16 PGE.7: 12 residues within 4Å: Chain A: Y.12, R.15, T.16, T.18, D.19, W.38, Y.51 Chain B: R.15, T.18, W.38, Y.51 Ligands: PGE.1 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.15, A:D.19, B:R.15, B:Y.51 Water bridges: A:T.16, B:T.18

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: T.16, T.17 Chain B: T.16, T.17 Ligands: SO4.8 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.17, A:T.17 SO4.8: 5 residues within 4Å: Chain A: T.16, T.17 Chain B: T.16, T.17 Ligands: SO4.2 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.17, A:T.17

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: Y.10 Chain B: N.55, Y.56 No protein-ligand interaction detected (PLIP) GOL.4: 5 residues within 4Å: Chain A: S.14, D.19, L.20, S.21 Chain B: R.48 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.48, A:S.14, A:S.21, A:S.21 Water bridges: A:D.19 GOL.5: 2 residues within 4Å: Chain A: K.24, G.25 No protein-ligand interaction detected (PLIP) GOL.6: 4 residues within 4Å: Chain A: Y.12, S.21, F.22 Chain B: R.48 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.48, A:S.21 Water bridges: B:R.48, A:S.21 GOL.9: 3 residues within 4Å: Chain A: N.55, Y.56 Chain B: Y.10 No protein-ligand interaction detected (PLIP) GOL.10: 5 residues within 4Å: Chain A: R.48 Chain B: S.14, D.19, L.20, S.21 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.14, B:S.21, B:S.21, A:R.48 Water bridges: B:D.19 GOL.11: 2 residues within 4Å: Chain B: K.24, G.25 No protein-ligand interaction detected (PLIP) GOL.12: 4 residues within 4Å: Chain A: R.48 Chain B: Y.12, S.21, F.22 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.48, B:S.21 Water bridges: A:R.48, B:S.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Camara-Artigas, A. et al., Crystal structure of the intertwined form of the Src tyrosine kinase SH3 domain E97T-Q128R mutant. to be published

Release Date

2016-03-02

Peptides

Protein-tyrosine kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein-tyrosine kinase

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