SMTL ID : 4y9l.1

Crystal Structure of Caenorhabditis elegans ACDH-11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 29 residues within 4Å: Chain A: Q.188, W.189, M.190, T.191, G.195, G.196, S.197, F.223, S.224, S.225, K.277, T.280, I.444, W.445, E.446, T.448, N.450, V.451, L.454 Chain B: R.341, V.343, F.344, Q.348, W.351, E.419, C.420, G.422, G.423, Y.426 31 PLIP interactions: 25 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:F.223, A:K.277, A:W.445, A:W.445, B:Y.426 Hydrogen bonds: A:Q.188, A:M.190, A:T.191, A:T.191, A:G.196, A:S.197, A:S.197, A:S.225, A:E.446, A:T.448, B:R.341, B:Q.348, B:C.420, B:G.423 Water bridges: A:Q.188, A:Q.188, A:D.198, A:F.223, A:F.223, A:G.447, A:G.447, A:N.450, A:N.450 pi-Stacking: A:F.223, A:W.445 Salt bridges: B:R.341 FAD.2: 30 residues within 4Å: Chain A: R.341, V.343, F.344, Q.348, W.351, H.354, E.419, C.420, G.422, G.423, Y.426 Chain B: Q.188, W.189, M.190, T.191, G.195, G.196, S.197, F.223, S.224, S.225, K.277, T.280, V.441, W.445, E.446, T.448, N.450, V.451, L.454 34 PLIP interactions: 26 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:K.277, B:V.441, B:W.445, B:W.445 Hydrogen bonds: B:Q.188, B:M.190, B:T.191, B:T.191, B:T.191, B:G.196, B:S.197, B:S.225, B:E.446, B:T.448, A:Q.348, A:H.354, A:E.419, A:G.423 Water bridges: B:Q.188, B:Q.188, B:Q.188, B:G.195, B:F.223, B:E.446, B:E.446, B:E.446, B:N.450, B:N.450, B:N.450, A:R.341, A:Q.424 pi-Stacking: B:F.223 Salt bridges: A:R.341, A:R.341 FAD.3: 29 residues within 4Å: Chain C: Q.188, W.189, M.190, T.191, G.195, G.196, S.197, F.223, S.224, S.225, K.277, T.280, I.444, W.445, E.446, T.448, N.450, V.451, L.454 Chain D: R.341, V.343, F.344, Q.348, W.351, E.419, C.420, G.422, G.423, Y.426 32 PLIP interactions: 26 interactions with chain C, 6 interactions with chain D Hydrophobic interactions: C:F.223, C:K.277, C:W.445, C:W.445, D:Y.426 Hydrogen bonds: C:Q.188, C:M.190, C:T.191, C:T.191, C:G.196, C:S.197, C:S.197, C:S.225, C:E.446, C:T.448, C:T.448, D:R.341, D:Q.348, D:C.420, D:G.423 Water bridges: C:Q.188, C:Q.188, C:D.198, C:F.223, C:F.223, C:G.447, C:G.447, C:N.450, C:N.450 pi-Stacking: C:F.223, C:W.445 Salt bridges: D:R.341 FAD.4: 30 residues within 4Å: Chain C: R.341, V.343, F.344, Q.348, W.351, H.354, E.419, C.420, G.422, G.423, Y.426 Chain D: Q.188, W.189, M.190, T.191, G.195, G.196, S.197, F.223, S.224, S.225, K.277, T.280, V.441, W.445, E.446, T.448, N.450, V.451, L.454 36 PLIP interactions: 28 interactions with chain D, 8 interactions with chain C Hydrophobic interactions: D:K.277, D:V.441, D:W.445, D:W.445 Hydrogen bonds: D:Q.188, D:M.190, D:T.191, D:T.191, D:T.191, D:G.196, D:S.197, D:S.225, D:E.446, D:T.448, D:T.448, C:Q.348, C:E.419, C:G.423 Water bridges: D:Q.188, D:Q.188, D:Q.188, D:G.195, D:F.223, D:E.446, D:E.446, D:E.446, D:N.450, D:N.450, D:N.450, D:N.450, C:R.341, C:E.419, C:Q.424 pi-Stacking: D:F.223 Salt bridges: C:R.341, C:R.341

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, D.K. et al., Acyl-CoA Dehydrogenase Drives Heat Adaptation by Sequestering Fatty Acids. Cell (2015)

Release Date

2015-06-03

Peptides

Protein ACDH-11, isoform b: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Protein ACDH-11, isoform b

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